Systems and methods for imaging and processing tissue
Inventors
Assignees
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Abstract
In accordance with preferred embodiments of the present invention, a method for imaging tissue, for example, includes the steps of mounting the tissue on a computer controlled stage of a microscope, determining volumetric imaging parameters, directing at least two photons into a region of interest, scanning the region of interest across a portion of the tissue, imaging layers of the tissue, sectioning a portion of the tissue, capturing the sectioned tissue, and imaging additional layers of the tissue in a second volume of the tissue, and capturing each portion of sectioned tissue, and processing three-dimensional data that is collected to create a three-dimensional image of the region of interest. Further, captured tissue sections can be processed, re-imaged, and indexed to their original location in the three dimensional image.
Core Innovation
The invention relates to imaging a tissue sample by illuminating a first region of tissue within a tissue sample with light, detecting light to form an image of the first region including tissue below a first sectioning depth, and sectioning a portion of the imaged tissue at the first sectioning depth to expose a second region and form a first section of tissue. The process is repeated for the second region by illuminating and detecting light to form an image of the second region including tissue below a second sectioning depth, and sectioning at the second sectioning depth to form a second section of tissue.
The invention further processes the first section and the second section and images the processed sections to form processed OCT tissue images using an optical coherence tomography (OCT) imaging mode. The processed OCT tissue images are analyzed in combination with at least the image of the first region to register the OCT tissue images of the first section and the second section, thereby registering OCT images associated with multiple sectioning depths back to the corresponding imaging context of the first-region image.
In an organ implementation, the invention illuminates a first region of tissue within an organ positioned in an optical path of an imaging system and detects light to form a first image including tissue below a first sectioning depth, then sectioning at the first sectioning depth exposes a second region and forms a first tissue section. The invention registers the first image of the first region with the first image of the second region, processes both tissue sections, images the processed sections with an OCT imaging mode to form processed OCT tissue images, and analyzes the processed OCT tissue images together with at least the first image of the first region to register the processed OCT tissue images of the first and second tissue sections.
Claims Coverage
The document includes two independent method claims. Across the independent claims, the core coverage centers on repeated imaging-to-sectioning at different sectioning depths, OCT imaging of processed sections, and analyzing and using pre-sectioning images to register OCT tissue images of first and second sections.
Imaging a first region at a first sectioning depth and sectioning to expose a second region
Illuminating a first region of tissue within a tissue sample with light and detecting light from the first region to form an image of the first region including tissue below a first sectioning depth; sectioning a portion of the imaged tissue at the first sectioning depth to expose a second region and form a first section of tissue.
Imaging a second region at a second sectioning depth and sectioning to form a second section
Illuminating the second region of tissue; detecting light from the second region to form an image of the second region including tissue below a second sectioning depth; sectioning a portion of the second region of tissue at the second sectioning depth to form a second section of tissue.
Processing sections and OCT imaging of processed tissue sections
Processing the first section of tissue and the second section of tissue; imaging the processed first section of tissue and the processed second section of tissue to form processed OCT tissue images using an optical coherence tomography (OCT) imaging mode.
Registering processed OCT tissue images using pre-sectioning context
Analyzing the processed OCT tissue images in combination with at least the image of the first region of tissue to register the OCT tissue images of the first section of tissue and the second section of tissue.
Organ imaging with registered first and second region images
Illuminating a first region of tissue within an organ with light, detecting light from the tissue to form a first image including tissue within the organ below a first sectioning depth; sectioning to expose a second region and to form a first tissue section; illuminating and detecting light from the second region to form a first image of the second region including tissue within the organ below a second sectioning depth; sectioning to form a second tissue section; registering the first image of the first region of tissue with the first image of the second region of tissue.
Processing organ sections and OCT imaging with OCT registration analysis
Processing the first tissue section and the second tissue section; imaging the processed first tissue section and the processed second tissue section with an OCT imaging mode to form processed OCT tissue images; analyzing the processed OCT tissue images in combination with at least the first image of the first region of tissue to register the processed OCT tissue images of the first tissue section and the second tissue section.
Overall, the independent claims define a workflow that images tissue regions up to sectioning depths, sections to form multiple tissue sections, processes and images the processed sections with OCT, and uses analysis together with at least the first-region image, and for the organ claim registration of first- and second-region images, to register OCT tissue images of corresponding sections.
Stated Advantages
Accurate registration of OCT tissue images despite sectioning distortions via analysis in combination with at least the image of the first region.
Major speed improvements versus a workflow taking about ~60 days to generate data.
Compatibility with multiple biomarkers/labeling methods used during processing of sections.
A transfer/storage workflow for individual indexed sections.
Documented Applications
Whole mouse heart 3D imaging using subcellular/multispectral imaging.
Vascular casting-based angiogenesis assays with re-overlay of IHC onto 3D structure.
Assessment of collagen via SHG.
Automated brain atlas generation with IHC processing and atlas tiling/registration.
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