Multimeric T-cell modulatory polypeptides and methods of use thereof

Inventors

Cemerski, SasoSeidel, III, Ronald D.Chaparro, Rodolfo J.Ross, John F.

Assignees

Cue Biopharma Inc

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Publication Number

US-12257311-B2

Patent

Publication Date

2025-03-25

Expiration Date


Abstract

The present disclosure provides T-cell modulatory multimeric polypeptides that comprise an immunomodulatory polypeptide and that comprise an epitope-presenting Wilms tumor peptide. A T-cell modulatory multimeric polypeptide is useful for modulating the activity of a T cell, and for modulating an immune response in an individual.

Core Innovation

The disclosure describes WT1-directed T-cell modulatory multimeric polypeptides configured as disulfide-linked heterodimeric TMMPs and homodimers of two heterodimers. The TMMPs include a WT1 peptide, a β2-microglobulin (β2M) polypeptide, an MHC class I heavy chain polypeptide, and an immunoglobulin (Ig) Fc polypeptide, with peptide linkers comprising a Cys residue and engineered cysteine substitutions that form one or two disulfide bonds.

The disclosed TMMP designs include variant IL-2 polypeptides, optionally arranged as tandem or multiple immunomodulatory domains, together with additional immunomodulatory polypeptides such as checkpoint and cytokine immunomodulatory polypeptides. The text also describes alternative N-to-C terminal arrangements, disulfide-bonded heterodimeric frameworks, and Ig Fc scaffold options, including Fc engineering that modulates Fc receptor interactions, including FcRn binding.

The disclosure further specifies epitope-specific T-cell modulation by administering WT1-specific TMMPs in cancer treatment settings for cancers expressing WT1. It also includes nucleic acids encoding TMMP chains, including separate versus single vectors, and reports that TMMPs with double disulfide-bonded heterodimer frameworks exhibit improved in vitro stability, can expand antigen-specific CD8+ T cells, and generate selective cytokine/effector responses.

Claims Coverage

The provided independent claims are directed to treatment of a Wilms Tumor-1-associated cancer by administering a therapeutically effective amount of a homodimer pharmaceutical composition comprising two heterodimers. The inventive features center on a WT1 peptide–β2M module linked by a Cys-containing peptide linker, an MHC class I heavy chain module fused to variant IL-2 and an Ig Fc polypeptide, and disulfide-bond coupling within and between the heterodimers.

WT1 peptide–β2M heterodimer with Cys-containing linker

Each heterodimer comprises a first polypeptide having a WT1 peptide, a β2-microglobulin (β2M) polypeptide, and a peptide linker between the WT1 peptide and the β2M polypeptide, wherein the peptide linker comprises a Cys residue.

Variant IL-2–MHC class I heavy chain–Ig Fc heterodimer polypeptide

Each heterodimer comprises a second polypeptide having two variant IL-2 polypeptides, a major histocompatibility complex (MHC) class I heavy chain polypeptide, and an immunoglobulin (Ig) Fc polypeptide.

First disulfide bond joining Cys in linker to Cys in MHC heavy chain

Each heterodimer comprises a first disulfide bond formed between the Cys residue in the peptide linker between the WT1 peptide and the β2M polypeptide and a Cys residue in the MHC class I heavy chain polypeptide.

Second disulfide bond joining Cys in β2M to Cys in MHC heavy chain

Each heterodimer comprises a second disulfide bond formed between a Cys residue in the β2M polypeptide and a Cys residue in the MHC class I heavy chain polypeptide.

Fc–Fc disulfide linkage linking Ig Fc polypeptides of two heterodimers

Two disulfide bonds link the Ig Fc polypeptide of one heterodimer to the Ig Fc polypeptide of the other heterodimer, such that the pharmaceutical composition comprises a homodimer consisting of two heterodimers.

Across the independent claims, the coverage is directed to a homodimer pharmaceutical composition formed from two heterodimers, where each heterodimer combines a WT1 peptide–β2M module linked by a Cys-containing linker with an MHC class I heavy chain module containing variant IL-2 and an Ig Fc polypeptide. The claims further define a disulfide-bond topology within each heterodimer and a disulfide-bond coupling between the two heterodimers via the Ig Fc polypeptides for use in treating a WT1-associated cancer.

Stated Advantages

Improved in vitro stability of TMMPs with double disulfide-bonded heterodimer frameworks.

Ability to expand antigen-specific CD8+ T cells and generate selective cytokine/effector responses.

Engineered IL-2 activity is described as functional but attenuated.

Fc engineering is described as modulating Fc receptor interactions, including FcRn binding.

Increased yield of disulfide-linked heterodimeric TMMP versus single-disulfide controls.

Documented Applications

Treating a patient having a Wilms Tumor-1-associated cancer by administering the specified homodimer pharmaceutical composition.

Optionally co-administering immune checkpoint inhibitors in the treatment context, with checkpoint targets including PD-1/PD-L1/CTLA-4.

Treating a patient having a Wilms Tumor-1-associated cancer.

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