Phthalazine derivatives as inhibitors of PARP1, PARP2, and/or tubulin useful for the treatment of cancer

Inventors

Peto, Csaba J.Jablons, David M.TSANG, TszeLemjabbar-Alaoui, Hassan

Assignees

Atlasmedx IncUniversity of California San Diego UCSD

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Publication Number

US-12145925-B2

Patent

Publication Date

2024-11-19

Expiration Date


Abstract

The application relates to phthalazine derivatives of formula (I) which are inhibitors of PARP1, PARP2 and/or tubulin and thus useful for the treatment of cancer. Also disclosed are pharmaceutical formulations containing such compounds, as well as combinations of these compounds with at least one additional therapeutic agent.

Core Innovation

The invention relates to compounds, or salts thereof, having a structure according to formula (I). The scaffold includes a benzimidazole core connected to a substituted 4-oxo-3,4-dihydrophthalazin-1-ylmethyl/aryl group, with defined connectivity to the methylene group, the U ring, the T ring, and the NH-Y-Z-R1 segment. The disclosed embodiments include carbamate, urea, sulfonamide, and amide derivatives within this scaffold.

Within formula (I), Y is C(O) or S(O), and Z is O, CH2, NH, or N(CH2R7), wherein R7 is hydrogen or substituted or unsubstituted C1 to C6 alkyl. The structure is further diversified by R1, R2, R5, and R6, where R1 is hydrogen or selected substituted or unsubstituted alkyl, heteroalkyl, aryl, arylalkyl, cycloalkyl, or heterocycloalkyl, and R2, R5, and R6 are hydrogen or halogen or substituted or unsubstituted C1 to C6 alkyl.

The disclosed embodiments include benzimidazole-linked carbamates and ureas, including methyl and ethyl carbamate forms, with specific substitutions such as fluoro, difluoro, chloro, methyl, methoxy, ethoxy, trifluoromethyl, trifluoromethoxy, methoxyethoxy, difluoromethoxy, and heteroaryl furan analogs. The retained core is the benzimidazole-(4-oxo-3,4-dihydrophthalazin-1-yl)methyl scaffold.

The compounds are associated with inhibitory activity directed to PARP1 and/or PARP2 and/or tubulin, and with use in cancer treatment where the cancer is deficient in Homologous Recombination (HR)-dependent DNA double strand repair (DSB). Biological evaluation is also described, including PARP1 and PARP2 IC50 determination, PARP trapping on damaged DNA, tubulin polymerization effects, and cell viability assays in multiple solid tumor cell lines.

Claims Coverage

The consolidated claim coverage includes one principal independent claim directed to a compound, or a salt thereof, according to formula (I), with defined scaffold connectivity and multiple substituent variables. The inventive features combine the T/U connectivity, Y and Z linkage options, and the variable sets R1, R2, R5, and R6, with dependent claims further refining substituents and biological uses.

Formula (I) scaffold with defined T connectivity

A compound, or a salt thereof, having a structure according to formula (I), wherein T has a structure with covalent bonds to the methylene group and to the U ring in formula (I).

Y and Z linkage options

Y is C(O) or S(O), and Z is O, CH2, NH, or N(CH2R7), wherein R7 is hydrogen or substituted or unsubstituted C1 to C6 alkyl.

Substituent-variable scope for R1, R2, R5, and R6

R1 is selected from hydrogen, substituted or unsubstituted C1 to C6 alkyl, heteroalkyl, aryl, arylalkyl, cycloalkyl, and heterocycloalkyl, while R2, R5, and R6 are each hydrogen or halogen or substituted or unsubstituted C1 to C6 alkyl.

PARP1/PARP2/tubulin inhibition

Inhibiting PARP1 and/or PARP2 and/or tubulin by contacting the targets with an effective amount of the compound.

Cancer treatment in HR-dependent DSB deficiency

Treating cancer in an animal by administering a therapeutically effective amount of the compound, where the cancer is deficient in Homologous Recombination (HR)-dependent DNA double strand repair (DSB).

Claim coverage centers on a formula (I) compound class defined by scaffold connectivity, Y and Z linkage choices, and broad but specified substituent ranges for R1, R2, R5, and R6. The dependent coverage also includes benzimidazole/phthalazinone/carbamate and urea embodiments and use features for PARP1/PARP2/tubulin inhibition and cancer treatment in HR-dependent DSB deficiency.

Stated Advantages

Inhibiting PARP1 and/or PARP2 and/or tubulin.

Use for cancer treatment is explicitly stated.

Pharmaceutical formulations and combination therapies are contemplated.

Documented Applications

Inhibiting PARP1 and/or PARP2 and/or tubulin by contacting PARP1 and/or PARP2 and/or tubulin with an effective amount of the compound.

Treating cancer in an animal by administering a therapeutically effective amount of the compound where the cancer is deficient in Homologous Recombination (HR)-dependent DNA double strand repair (DSB).

Enzymatic PARP1 and PARP2 IC50 determination using a biotinylated poly(ADP-ribose) histone readout.

PARP trapping on damaged DNA via chromatin-bound PARP1, including Western blot analysis.

Assessment of tubulin polymerization effects using a microtubule polymerization assay measuring fluorescence.

Cell viability assays in multiple solid tumor cell lines including A549, OVCAR-8, and MDA-MB-436, with comparisons to Olaparib and other controls.

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