Compositions and methods for treating bacterial infections
Inventors
Shalek, Alexander K. • Hughes, Travis • Wadsworth, Marc H. • SEDER, Robert • Roederer, Mario • Flynn, Joanne L. • Darrah, Patricia
Assignees
Massachusetts Institute of Technology • University of Pittsburgh • US Department of Health and Human Services
Publication Number
US-11865168-B2
Publication Date
2024-01-09
Expiration Date
2040-12-30
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Abstract
Provided herein are compositions and methods for therapeutic and/or prophylactic treatment of an intracellular bacterial infection in a subject in need thereof, comprising one or more modulating agents, wherein the one or more modulating agents increase expression of IFNγ, IL-2, TNF, and/or IL-17 in systemic and/or lung T cells. In some embodiments, the increase of expression of IFNγ, IL-2, TNF, and/or IL-17 occurs in lung T cells. The lung T cells can be lung resident T cells or systemic T cells that are recruited to the lung. In some embodiments, the T cells are CD4+ and/or CD8+ T cells. In some embodiments, the intracellular bacterial infection is a Mycobacterium tuberculosis (MTB) infection.
Core Innovation
The invention provides compositions and methods for therapeutic and/or prophylactic treatment of intracellular bacterial infections, particularly Mycobacterium tuberculosis (MTB) infection, in subjects in need thereof. The compositions comprise one or more modulating agents that increase expression of IFNγ, IL-2, TNF, and/or IL-17 in systemic and/or lung T cells. The increase in expression may occur in lung resident T cells or systemic T cells recruited to the lung, and the modulating agents may further increase the abundance of CD3+ T cells, CD11c+ macrophages, dendritic cells, or combinations thereof.
The background of the invention identifies a pressing global health need to develop more efficacious vaccines against pulmonary tuberculosis (TB), since the only licensed TB vaccine, Bacille Calmette-Guerin (BCG), administered intradermally at birth, provides excellent protection against disseminated TB but has variable efficacy against pulmonary disease at other ages. Pulmonary Mtb infection initiates in lung macrophages, with T cell immunity required to control infection and prevent disease. Current vaccine candidates focus on eliciting T cell immunity but face challenges in inducing and sustaining lung-resident T cells with sufficient breadth and durability. Intradermal and intramuscular routes commonly used for vaccines do not induce high frequencies of lung resident T cells, which may be critical for protection. Thus, formulations and delivery routes that induce systemic and tissue resident T cells, particularly in the lung, along with broad antigenic breadth, are critical for efficacious TB vaccines.
The invention addresses the problem of inadequate induction and maintenance of protective lung-resident T cell immunity by providing pharmaceutical formulations comprising modulating agents and/or formulations such as BCG vaccines administered via routes that enhance systemic and lung-resident T cell responses, such as intravenous administration. These formulations increase expression of key immune cytokines (IFNγ, IL-2, TNF, IL-17) and augment the abundance and function of T cells and antigen-presenting cells in lung and systemic compartments, thereby providing enhanced prophylactic and therapeutic efficacy against intracellular bacterial infections such as MTB.
Claims Coverage
The independent claims encompass methods of eliciting enhanced immune responses by intravenous administration of a pharmaceutical formulation comprising one or more modulating agents and BCG, with focus on MTB antigens and T cell cytokine expression.
Method of eliciting enhanced immune response via intravenous administration
Administering intravenously to a subject a pharmaceutical formulation comprising one or more modulating agents and Bacille Calmette-Guerin (BCG) for prophylactic treatment of Mycobacterium tuberculosis, wherein the modulating agents are selected from RNA encoding MTB antigens Ag85A and/or Ag85B, viral vectors encoding said antigens, or the antigens themselves, and where these agents increase expression of IFNγ, IL-2, TNF, and/or IL-17 in systemic and/or lung T cells.
Confirmation of enhanced immune response by T cell measurement
Confirming an enhanced immune response by detecting an increased fractional or absolute number of Vγ9+ γδ T cells or an increased proportion of transitional-memory (Ttm) cells compared to central-memory (Tcm) cells in a blood sample from the subject.
Use of attenuated viral vectors encoding MTB antigens
Using an attenuated viral vector encoding one or more MTB antigens selected from Ag85A and Ag85B among the modulating agents in the formulation.
The claims cover intravenous administration of pharmaceutical formulations including BCG and MTB antigen modulating agents that enhance expression of key immune cytokines in systemic and/or lung T cells, with confirmation by specific T cell subset measurements, and include use of attenuated viral vectors encoding relevant MTB antigens.
Stated Advantages
IV administration of BCG induces substantially more antigen-responsive CD4 and CD8 T cell responses in blood, spleen, bronchoalveolar lavage, and lung lymph nodes compared to other routes.
IV immunization induces a high frequency of antigen-responsive T cells across all lung parenchymal tissue, leading to sterilizing or near-sterilizing protection against MTB challenge in rhesus macaques.
Formulations and routes that induce systemic and lung resident T cells with increased expression of IFNγ, IL-2, TNF, and/or IL-17 facilitate durable protection against pulmonary tuberculosis.
Documented Applications
Therapeutic and prophylactic treatment of intracellular bacterial infections, particularly Mycobacterium tuberculosis infection.
Use of intravenous administration of BCG vaccine formulations to induce robust and durable systemic and lung-resident T cell immunity.
Modulation of microenvironment of cell masses such as granulomas and fibromas in subjects infected with intracellular bacteria.
Methods of preventing or treating MTB infection in subjects by administering pharmaceutical formulations comprising modulating agents that increase expression of protective cytokines in T cells and macrophages.
Adoptive cell therapies involving modulation of immune cells, including T cells, to enhance immune responses against intracellular bacterial infections.
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