Multi-chain polypeptide-containing tri-specific binding molecules
Inventors
Johnson, Leslie S. • Huang, Ling • Chichili, Gurunadh Reddy • Shah, Kalpana • Lam, Chia-Ying Kao • Burke, Stephen James • Liu, Liqin • Moore, Paul A. • Bonvini, Ezio • Barat, Bhaswati
Assignees
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Abstract
The present invention relates to Tri-Specific Binding Molecules, which are multi-chain polypeptide molecules that possess three Binding Domains and are thus capable of mediating coordinated binding to three epitopes. The Binding Domains may be selected such that the Tri-Specific Binding Molecules are capable of binding to any three different epitopes. Such epitopes may be epitopes of the same antigen or epitopes of two or three different antigens. In a preferred embodiment, one of such epitopes will be capable of binding to CD3, the second of such epitopes will be capable of binding to CD8, and the third of such epitopes will be capable of binding to an epitope of a Disease-Associated Antigen. The invention also provides a novel ROR1-binding antibody, as well as derivatives thereof and uses for such compositions.
Core Innovation
The invention provides a multi-chain polypeptide-containing Tri-Specific Binding Molecule that immunospecifically binds to three different epitopes. The molecule comprises three different polypeptide chains covalently complexed together and includes an Antigen-Binding Domain I, an Antigen-Binding Domain II, and an Antigen-Binding Domain III that respectively bind Epitope I, Epitope II, and Epitope III. Antigen-Binding Domains I and II are Diabody-Type Binding Domains, and Antigen-Binding Domain III is a Non-Diabody-Type Binding Domain.
The Fc Domain is formed by association of CH2-CH3 domains of the first and third polypeptide chains. The first polypeptide chain includes VL1 Domain, VHII Domain, a Heterodimer-Promoting Domain, and a CH2-CH3 Domain, and the second polypeptide chain includes VLII Domain, VHI Domain, and a Heterodimer-Promoting Domain. The third polypeptide chain includes VHIII Domain and a cysteine-containing domain together with a CH2-CH3 Domain.
The document further defines specific chain architectures and domain orderings, including arrangements of VL and VH domains linked by Linker 1, Linker 2, Linker 3, and Linker 4 together with a heterodimer-promoting domain and a CH2-CH3 Domain. Linker compositions, cysteine-containing domains, and CH2-CH3 Domain configurations are specified, and the Heterodimer-Promoting Domain is defined as an E-coil Domain and a K-coil Domain, in either E-coil/K-coil or K-coil/E-coil placement.
The document also specifies that VL1 and VH1 form Antigen-Binding Domain I, VL2 and VH2 form Antigen-Binding Domain II, and VL3 and VH3 form Antigen-Binding Domain III. Covalent coupling is described using cysteine-containing domains and cysteine-based elements, and the CH2-CH3 Domains are defined as knob-bearing or hole-bearing and configured reciprocally across the polypeptide chains.
Claims Coverage
The independent claim identified is clm-00001. It defines one tri-specific multi-chain polypeptide architecture with three antigen-binding domains and an Fc Domain, centered on binding three epitopes, forming two diabody-type domains and one non-diabody-type domain, and assembling the Fc Domain by CH2-CH3 association. The claim set also includes defined chain architectures, linker selections, and heterodimer-promoting domains.
Tri-specific multi-chain polypeptide with three epitope-binding domains and Fc domain association
A multi-chain polypeptide-containing Tri-Specific Binding Molecule that immunospecifically binds to three different epitopes, comprising three different polypeptide chains covalently complexed together, an Antigen-Binding Domain I binding Epitope I, an Antigen-Binding Domain II binding Epitope II, and an Antigen-Binding Domain III binding Epitope III, and an Fc Domain.
Defined N-to-C chain architectures including Fc-forming CH2-CH3 association
A first polypeptide chain comprising VL1 Domain, VHII Domain, a Heterodimer-Promoting Domain, and a CH2-CH3 Domain; a second polypeptide chain comprising VLII Domain, VHI Domain, and a Heterodimer-Promoting Domain; and a third polypeptide chain comprising VHIII Domain and a cysteine-containing domain together with a CH2-CH3 Domain.
Domain pairing into diabody-type I and II and non-diabody-type III with Fc formation from CH2-CH3
VL1 Domain and VHI Domain associate to form Antigen-Binding Domain I, VLII Domain and VHII Domain associate to form Antigen-Binding Domain II, and VLIII Domain and VHIII Domain associate to form Antigen-Binding Domain III; the CH2-CH3 Domain of the first polypeptide chain and the CH2-CH3 Domain of the third polypeptide chain associate to form the Fc Domain; Antigen-Binding Domain I and Antigen-Binding Domain II are Diabody-Type Binding Domains, and Antigen-Binding Domain III is a Non-Diabody-Type Binding Domain.
Specified linker compositions and E-coil/k-coil heterodimer promotion
Linker 1, Linker 2, Linker 3, and Linker 4 comprise specified sequence alternatives; CH2-CH3 Domain comprises specified sequence alternatives; the Cysteine-Containing Domain independently comprises specified sequence alternatives; and the Heterodimer-Promoting Domain on the first polypeptide chain is an E-coil Domain and the Heterodimer-Promoting Domain on the second polypeptide chain is a K-coil Domain, or vice versa.
The claim coverage centers on a covalently complexed three-chain tri-specific binding molecule with three epitope-binding domains, two diabody-type binding domains, one non-diabody-type binding domain, and an Fc Domain formed from CH2-CH3 association. It further constrains the architecture with specified linker sequence selections, E-coil/K-coil heterodimer-promoting domains, and defined light/heavy variable domain roles for Epitope I, Epitope II, and Epitope III binding.
Stated Advantages
Improved potency versus corresponding DART controls in some configurations.
Reported reductions in cytokine release compared to CD3-only DART controls.
Documented Applications
Directed/redirected cytotoxicity against antigen-expressing cells using CTL activity.
Use across effector types and evaluation with CD4+ T cells versus CD8+ T cells, including altered binding/cytotoxicity selectivity for CD8+ versus CD4+ T cells.
Disease-antigen targeting examples including B7-H3, 5T4, ROR1, and HIV (gp140) variants with coordinated binding to antigen and CD3 and binding to antigen-expressing cells.
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