Combination therapy with gold controlled transgenes

Inventors

Wang, BenjaminDylla, ScottZeiner, Gusti

Assignees

Chimera Bioengineering Inc

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Publication Number

US-11648277-B2

Patent

Publication Date

2023-05-16

Expiration Date


Abstract

Control Devices are disclosed including RNA destabilizing elements (RDE) combined with transgenes, including Chimeric Antigen Receptors (CARs) in eukaryotic cells. These RDEs can be used to optimize expression of transgenes, e.g., CARs, in the eukaryotic cells so that, for example, effector function is optimized. CARs and transgene payloads can also be engineered into eukaryotic cells so that the transgene payload is expressed and delivered at desired times from the eukaryotic cell. Such CAR T-cells with transgene payloads can be combined with the administration of other molecules, e.g., other therapeutics such as anticancer therapies.

Core Innovation

The patent relates to RNA control technology for engineered eukaryotic cells, where RNA destabilizing elements regulate transgene expression kinetics. The disclosed concept uses RNA degradation elements, including AU rich elements and specific AU#/3′UTR-derived elements, coupled with ligand-controlled RNA control devices and with metabolic or glycolytic state control, including GAPDH and HuR, to control expression timing of payloads, including chimeric antigen receptor payloads.

The disclosed invention provides nucleic-acid constructs for CAR and transgenes in which payload expression is conditionally controlled using a RNA degradation element linked to the transgene. Transcribing the heterologous nucleic acid produces a transcript encoding the transgene operably linked to the RDE, thereby conditioning payload production, including cytokines and other functional molecules such as IL-12, antibodies, gene regulatory RNAs, enzymes, imaging reporters, and a kill-switch example using HSV-TK/GCV.

In the CAR T-cell context, a therapeutically effective method includes administering primary T-cells comprising an anti-TnMUC1 chimeric antigen receptor together with a heterologous nucleic acid that encodes an IL-12 transgene operably linked to an RNA degradation element that is an AU rich element. Binding of the anti-TnMUC1 chimeric antigen receptor to TnMUC1-positive prostate, triple negative breast, or pancreatic cancer activates the primary T-cell, increases the IL-12 amount from the polynucleotide, and results in killing of the cancer cells, while reducing systemic cytokine levels while maintaining localized anti-tumor activity.

Claims Coverage

The provided independent claim recites a method of treating a patient with TnMUC1-positive prostate, triple negative breast, or pancreatic cancer using primary T-cells expressing an anti-TnMUC1 CAR and a heterologous IL-12 nucleic acid whose transcript includes an RDE that is an AU rich element. The inventive coverage is centered on 3 main inventive features governing targeting, conditional IL-12 expression, and therapeutic effect.

TnMUC1-directed primary T-cell killing of TnMUC1-positive prostate, triple negative breast, and pancreatic cancers

A method of treating a patient by administering a therapeutically effective amount of a primary T-cell comprising an anti-TnMUC1 chimeric antigen receptor, wherein binding of the receptor to TnMUC1 on the prostate cancer, the breast cancer, or the pancreatic cancer activates the primary T-cell and results in killing cells of the respective cancers.

AU-rich RNA degradation element linked to heterologous IL-12 encoding nucleic acid

Administration includes a heterologous nucleic acid comprising a polynucleotide encoding an IL-12 that is operably linked to a polynucleotide encoding a RNA degradation element, wherein the RDE is an AU rich element, and transcription forms a transcript encoding the transgene operably linked to the RDE.

RDE-mediated increase of IL-12 upon T-cell activation

Transcribing the heterologous nucleic acid to make the transcript operably linked to the RDE, together with binding of the anti-TnMUC1 chimeric antigen receptor to TnMUC1, increases the amount of IL-12 made from the polynucleotide.

Overall claim coverage centers on administering primary anti-TnMUC1 CAR T-cells to engage TnMUC1-positive tumors, while using an AU-rich RNA degradation element linked to a heterologous IL-12 encoding nucleic acid to condition transcriptional output, increasing IL-12 upon CAR binding and enabling killing of tumor cells.

Stated Advantages

Reduces systemic cytokine levels while maintaining localized anti-tumor activity (e.g., IL-12).

Increased IL-12 made from the polynucleotide upon CAR binding.

Killing cells of the prostate cancer, triple negative breast cancer, or the pancreatic cancer.

Addresses adverse effects associated with CAR therapy, including cytokine release syndrome, tumor lysis syndrome, graft-versus-host reaction, and off-target effects.

Documented Applications

Treating a patient with prostate cancer positive for TnMUC1 using primary T-cells comprising an anti-TnMUC1 chimeric antigen receptor and an IL-12 encoding nucleic acid linked to an AU-rich RNA degradation element.

Treating a patient with triple negative breast cancer positive for TnMUC1 using primary T-cells comprising an anti-TnMUC1 chimeric antigen receptor and an IL-12 encoding nucleic acid linked to an AU-rich RNA degradation element.

Treating a patient with pancreatic cancer positive for TnMUC1 using primary T-cells comprising an anti-TnMUC1 chimeric antigen receptor and an IL-12 encoding nucleic acid linked to an AU-rich RNA degradation element.

Optionally treating with a second anti-cancer therapy in combination with the described engineered T-cell approach.

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