Safe lentiviral vectors for targeted delivery of multiple therapeutic molecules

Inventors

Lai, Zhennan • Galvin, Jeffrey A.

Assignees

American Gene Technologies International Inc

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Publication Number

US-11617760-B2

Patent

Publication Date

2023-04-04

Expiration Date


Abstract

The present application discloses a lentiviral transfer system which includes: (i) a self-inactivating transfer vector comprising: multiple gene units, wherein each gene unit includes a heterologous nucleic acid sequence operably linked to a regulatory nucleic acid sequence; and (ii) a helper construct which lacks a 5′ LTR, wherein the 5′ LTR has been replaced with a heterologous promoter, in which the helper construct further comprises: a lentiviral env nucleic acid sequence containing a deletion, wherein the deleted env nucleic acid sequence does not produce functional env protein; and a packaging signal contains a deletion, wherein the deleted packaging signal is nonfunctional.

Core Innovation

The invention relates to a self-inactivating lentiviral transfer system derived from HIV-1 for targeted delivery and long-term expression of multiple therapeutic molecules. The system includes a self-inactivating transfer vector that carries multiple gene units, where each gene unit comprises a heterologous nucleic acid sequence operably linked to a regulatory nucleic acid sequence. The vector further includes a mammalian insulator sequence and splice acceptor and splice donor sites, and the self-inactivating transfer vector is free of wPRE (wood-chuck hepatitis virus post-transcriptional element).

In the described system, helper construct features and deletions render env nucleic acid nonfunctional and disable the packaging signal by deletion, and the functional 5′ LTR is replaced by a heterologous promoter. Multiple heterologous gene units allow combined genetic payloads, including RNAi agents and tumor suppressor P53. Optional regulatory and control elements and encoded functional additions are described, including trafficking-signal fusions and translation initiation elements such as IRES, as well as enzyme-cleavage control elements.

The disclosed payloads include RNAi targeting BCL2 (Bcl-2) and P53, and the system is described as supporting combinations such as P53–BCL2 RNAi, with tumor reduction and tumor marker changes reported in in vitro and in vivo examples. Cell/tissue-specific promoter usage is described in the context of prostate cancer, including human prostate-specific antigen-related outcomes. Broader therapeutic indications described in the document include other cancers and multiple genetic or neurological disorders via replacement enzymes and/or RNAi.

Claims Coverage

The independent claims cover a lentiviral transfer system with a specific self-inactivating multi-gene-unit vector architecture and a pharmaceutical composition comprising lentiviral particles produced using that system. Across the independent claims, the inventive structure centers on multiple gene units with heterologous nucleic acids linked to regulatory nucleic acids, inclusion of a mammalian insulator and splice acceptor/donor sites, and the vector being free of wPRE.

Self-inactivating multi-gene-unit transfer vector without wPRE

A self-inactivating transfer vector comprising multiple gene units, wherein each gene unit comprises a heterologous nucleic acid sequence operably linked to a regulatory nucleic acid sequence, and wherein the self-inactivating transfer vector is free of wPRE (wood-chuck hepatitis virus post-transcriptional element).

Mammalian insulator and splice acceptor/donor sites in the self-inactivating vector

A self-inactivating transfer vector comprising a mammalian insulator sequence and splice acceptor and splice donor sites.

Envelope construct providing a functional env protein (optional)

A lentiviral transfer system further includes an envelope construct for providing a functional env protein.

Distinct first and second gene units with distinct regulatory nucleic acid sequences

A lentiviral transfer system includes a first gene unit operably linked to a first regulatory nucleic acid sequence and a second gene unit operably linked to a second regulatory nucleic acid sequence.

Encoded trafficking signal (optional)

First and/or second gene units encode a trafficking signal.

Cell or tissue-specific promoter selected from named promoters (optional)

Configured to use a cell or tissue-specific promoter selected from the group consisting of TSTA promoter, mesothelin promoter, hPSA promoter, hCCKAR promoter, hAFP promoter, and hNSE promoter.

RNAi agent or Bcl-2 expression-inhibiting polypeptide payload (optional)

The heterologous nucleic acid sequence encodes an RNAi agent or a polypeptide that inhibits expression of Bcl-2.

Pharmaceutical composition with lentiviral particle produced using the wPRE-free self-inactivating system

A pharmaceutical composition comprising a lentiviral particle for gene transfer, said lentiviral particle produced using a lentiviral transfer system comprising a self-inactivating transfer vector with multiple gene units, each gene unit comprising a heterologous nucleic acid sequence operably linked to a regulatory nucleic acid sequence, wherein the self-inactivating vector is free of wPRE (wood-chuck hepatitis virus post-transcriptional element).

Mammalian insulator and splice acceptor/donor sites in the pharmaceutical-composition system

The lentiviral transfer system used for producing the lentiviral particle comprises a mammalian insulator sequence and splice acceptor and donor sites.

Regulatory nucleic acid sequence includes a cell-specific or tissue-specific promoter (optional)

The regulatory nucleic acid sequence comprises a cell-specific promoter or a tissue-specific promoter.

Trafficking signal in at least one gene unit (optional)

At least one of the first gene unit or the second gene unit encodes a trafficking signal.

Additional envelope construct for producing functional env protein (optional)

The pharmaceutical composition further comprises an envelope construct for providing a functional env protein.

Payload includes RNAi agent or Bcl-2 expression inhibition (optional)

The heterologous nucleic acid sequence encodes at least one RNAi agent or at least one polypeptide that inhibits expression of Bcl-2.

Overall, claim coverage emphasizes a wPRE-free self-inactivating lentiviral transfer vector architecture with multiple gene units, heterologous nucleic acids linked to regulatory nucleic acids, and a mammalian insulator plus splice acceptor/donor sites. The independent pharmaceutical-composition claim ties a lentiviral particle product to that same vector architecture, with dependent claims adding optional envelope functionality, promoter selection for cell/tissue specificity, trafficking-signal encoding, and payloads including RNAi agents and Bcl-2 expression inhibition.

Stated Advantages

Not explicitly described in patent.

Documented Applications

Prostate cancer (P53 + BCL2 RNAi; prostate-specific promoter usage).

Other cancers.

Gaucher’s disease (replacement enzyme described as glucocerebrosidase; huCD25/huNGF mentioned).

Fabry’s disease (replacement enzyme described as alpha-galactosidase-A; huCD25 mentioned).

Leber congenital amaurosis (RPE65; huBDNF, hNSE, and hNGF mentioned).

Alzheimer’s disease (beta-amyloid precursor RNAi; hNGF and hBDNF mentioned).

Parkinson’s disease (hBDNF/hGDNF; hGAD and hNGF mentioned).

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