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Publication Number

US-11286501-B2

Patent

Publication Date

2022-03-29

Expiration Date


Abstract

The present disclosure provides polynucleotide cassettes, expression vectors and methods for the expression of a gene in mammalian cells to provide gene therapy for pyruvate kinase deficiency.

Core Innovation

The invention provides a gene-therapy approach for treating or preventing Pyruvate Kinase Deficiency (PKD) in a subject in need thereof. The approach involves contacting a hematopoietic stem cell with a recombinant lentivirus vector and administering the hematopoietic stem cell to the subject. The recombinant lentivirus vector comprises an expression cassette encoding a pyruvate kinase, liver and red blood cell (PKLR) polypeptide operatively linked to a promoter.

The expression cassette further includes a woodchuck hepatitis virus post-transcriptional regulatory element (Wpre). The Wpre comprises a sequence at least 90% identical to SEQ ID NO:1, including chimeric/mutated Wpre sequence variants and sequence identity variants.

The partial content also describes preclinical/translation context for PKD, including correction of anemia and reticulocytosis in PKD mice following PGK-coRPK lentiviral transduction and transplantation of lineage-depleted bone marrow/hematopoietic stem cells, along with normalization of erythroid differentiation and rescue of spleen/liver pathology and iron overload. It further describes genome-wide lentiviral vector integration mapping showing polyclonal reconstitution and lack of common insertion sites, with genome-wide integration analysis not enriching for oncogenic pathways based on Gene Ontology (GO) analysis.

Claims Coverage

The partial content provides two independent claims. Each independent claim is focused on the same core inventive architecture: a recombinant lentivirus vector with an expression cassette encoding PKLR, operatively linked to a promoter, and including a Wpre sequence with high sequence identity to SEQ ID NO:1. Across the two independent claims, the inventive features are captured by the lentiviral expression cassette design and the use of hematopoietic stem cells for treatment of PKD.

Lentiviral PKLR expression cassette with Wpre sequence identity to SEQ ID NO: 1

A recombinant lentivirus vector comprising an expression cassette wherein the expression cassette comprises a polynucleotide sequence encoding a pyruvate kinase, liver and red blood cell (PKLR) polypeptide operatively linked to a promoter, and wherein the expression cassette comprises a woodchuck hepatitis virus post-transcriptional regulatory element (Wpre), wherein the Wpre comprises a sequence at least 90% identical to SEQ ID NO: 1.

Treating or preventing PKD by contacting and administering transduced hematopoietic stem cells

A method of treating or preventing Pyruvate Kinase Deficiency (PKD) in a subject in need thereof comprising: contacting a hematopoietic stem cell with the recombinant lentivirus vector of the expression cassette architecture, and administering the hematopoietic stem cell to the subject.

Treating or preventing PKD by administering a transduced hematopoietic stem cell

A method of treating or preventing Pyruvate Kinase Deficiency (PKD) in a subject in need thereof comprising administering to the subject a hematopoietic stem cell transduced with the recombinant lentivirus vector comprising an expression cassette with a PKLR polynucleotide operatively linked to a promoter and a Wpre comprising a sequence at least 90% identical to SEQ ID NO: 1.

Across the independent claims, the inventive claim coverage is directed to PKD treatment methods that use hematopoietic stem cells modified with a recombinant lentivirus vector encoding PKLR under a promoter with a woodchuck hepatitis virus Wpre sequence having at least 90% identity to SEQ ID NO:1. One claim requires contacting then administering the hematopoietic stem cell, and the other requires administering the subject transduced hematopoietic stem cell.

Stated Advantages

Correction of anemia and reticulocytosis in PKD mice following PGK-coRPK lentiviral transduction and transplantation of lineage-depleted bone marrow/hematopoietic stem cells.

Normalization of erythroid differentiation and rescue of spleen/liver pathology and iron overload.

Polyclonal reconstitution and lack of common insertion sites.

Genome-wide integration analysis not enriching for oncogenic pathways based on Gene Ontology (GO) analysis.

Documented Applications

Treating or preventing Pyruvate Kinase Deficiency (PKD) in a subject in need thereof.

Transplantation of lineage-depleted bone marrow/hematopoietic stem cells in PKD mice.

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