GPAS
EIT Pathogena is dedicated to revolutionising infectious disease prevention and treatment through data-driven, global pathogen monitoring systems. It aims to build an 'Always-On' pathogen detection ecosystem, leveraging advanced genomics, AI, and international collaboration to improve health outcomes worldwide. The company develops cloud-based bioinformatics platforms for rapid, accurate pathogen genome analysis, supporting public health, research, and clinical applications.
Industries
Nr. of Employees
small (1-50)
Products
Bioinformatics Analysis Platform
A cloud-hosted, automated platform for pathogen sequence assembly, variant calling, species/lineage identification, resistance prediction, and report generation; supports web portal and CLI uploads.
SARS-CoV-2 genomic analysis pipeline
Amplicon-aware pipeline for tiled-amplicon SARS-CoV-2 sequencing that produces consensus assemblies, lineage assignments, related-isolate detection, and automated reports; validated across multiple sites and thousands of genomes.
Mycobacterium (TB & NTM) genomic analysis pipeline
Automated whole-genome sequencing pipeline for Mycobacterium tuberculosis complex and non-tuberculous mycobacteria including species identification, lineage calling, related-isolate detection and resistance prediction for multiple drugs.
Bioinformatics Analysis Platform
A cloud-hosted, automated platform for pathogen sequence assembly, variant calling, species/lineage identification, resistance prediction, and report generation; supports web portal and CLI uploads.
SARS-CoV-2 genomic analysis pipeline
Amplicon-aware pipeline for tiled-amplicon SARS-CoV-2 sequencing that produces consensus assemblies, lineage assignments, related-isolate detection, and automated reports; validated across multiple sites and thousands of genomes.
Mycobacterium (TB & NTM) genomic analysis pipeline
Automated whole-genome sequencing pipeline for Mycobacterium tuberculosis complex and non-tuberculous mycobacteria including species identification, lineage calling, related-isolate detection and resistance prediction for multiple drugs.
Services
Cloud-based bioinformatics analysis service
Scalable SaaS platform for assembly, variant calling, species and lineage identification, resistance prediction, and automated reporting for pathogen genomic data.
Organisational onboarding and data-sharing enablement
Account setup, role management (standard and super users), and opt-in inter-organisation secure data sharing and collaboration configuration.
Data anonymisation and privacy tooling
Options to remove human reads via a command-line tool prior to upload or automatic human read removal on upload to the portal to reduce PII risk.
Technical support and user resources
Built-in portal support features, troubleshooting guides, and email support for technical issues and onboarding.
Partnerships for surveillance and research
Collaborative partnerships and network agreements for secure, de-identified pathogen data sharing to enable surveillance, research, and public health responses.
Cloud-based bioinformatics analysis service
Scalable SaaS platform for assembly, variant calling, species and lineage identification, resistance prediction, and automated reporting for pathogen genomic data.
Organisational onboarding and data-sharing enablement
Account setup, role management (standard and super users), and opt-in inter-organisation secure data sharing and collaboration configuration.
Data anonymisation and privacy tooling
Options to remove human reads via a command-line tool prior to upload or automatic human read removal on upload to the portal to reduce PII risk.
Technical support and user resources
Built-in portal support features, troubleshooting guides, and email support for technical issues and onboarding.
Partnerships for surveillance and research
Collaborative partnerships and network agreements for secure, de-identified pathogen data sharing to enable surveillance, research, and public health responses.
Expertise Areas
- Pathogen genomics analysis
- Bioinformatics pipeline development
- Genomic surveillance and outbreak detection
- Antimicrobial resistance prediction
Key Technologies
- Next-generation sequencing (short- and long-read FASTQ inputs)
- Tiled-amplicon sequencing
- Consensus genome assembly
- Lineage assignment algorithms